SSH tunnelling

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What is SSH tunneling?

SSH tunnelling is a method to use a gateway computer to connect two computers that cannot connect directly.

In the context of Compute Canada, SSH tunneling is necessary in certain cases, because compute nodes on Niagara and Graham do not have direct access to the internet, nor can the compute nodes be contacted directly from the internet.

The following use cases require SSH tunnels:

  • Running commercial software on a compute node that needs to contact a license server over the internet;
  • Running visualization software on a compute node that needs to be contacted by client software on a user's local computer;
  • Running a Jupyter Notebook on a compute node that needs to be contacted by the web browser on a user's local computer.
  • Connecting to the Cedar database server from somewhere other than the Cedar head node, e.g., your desktop

In the first case, the license server is outside of the compute cluster and is rarely under a user's control, whereas in the other cases, the server is on the compute node but the challenge is to connect to it from the outside. We will therefore consider these two situations below.

While not strictly required to use SSH tunnelling, you may wish to be familiar with SSH key pairs.

Contacting a license server from a compute node

What's a port?

A port is a number used to distinguish streams of communication from one another. You can think of it as loosely analogous to a radio frequency or a channel. Many port numbers are reserved, by rule or by convention, for certain types of traffic. See List of TCP and UDP port numbers for more.


Certain commercially-licensed programs must connect to a license server machine somewhere on the internet via a predetermined port. If the compute node where the program is running has no access to the internet, then a gateway server which does have access must be used to forward communications on that port, from the compute node to the license server. To enable this, one must set up an SSH tunnel. Such an arrangement is also called port forwarding.

In most cases, creating an SSH tunnel in a batch job requires only two or three commands in your job script. You will need the following information:

  • The IP address or the name of the license server (here LICSERVER).
  • The port number of the license service (here LICPORT).

You should obtain this information from whoever maintains the license server. That server also must allow connections from the login nodes; for Niagara, the outgoing IP address will either be 142.150.188.131 or 142.150.188.132.

With this information, one can now setup the SSH tunnel. For Graham, an alternative resolution is to request a firewall exception for license server LICSERVER and its specific port LICPORT.

The gateway server on Niagara is nia-gw. On Graham, you need to pick one of the login nodes (gra-login1, 2, ...). Let us call the gateway node GATEWAY. You also need to choose the port number on the compute node to use (here COMPUTEPORT).

The SSH command to issue in the job script is then:

ssh GATEWAY -L COMPUTEPORT:LICSERVER:LICPORT -n -N -f

In this command, the string following the -L parameter specifies the port forwarding information.

  • -n prevents SSH from reading input (it couldn't in a compute job anyway)
  • -N tells SSH not to open a shell on the GATEWAY
  • -f tells SSH to run in the background, allowing the job script to proceed past this SSH command.

A further command to add to the job script should tell the software that the license server is on port COMPUTEPORT on the server 'localhost'. The term 'localhost' is the standard name by which a computer refers to itself. It is to be taken literally and should not be replaced with your computer's name. Exactly how to inform your software to use this port on 'localhost' will depend on the specific application and the type of license server, but often it is simply a matter of setting an environment variable in the job script like

export MLM_LICENSE_FILE=COMPUTEPORT@localhost

Example job script

The following job script sets up an SSH tunnel to contact licenseserver.institution.ca at port 9999:

#!/bin/bash
#SBATCH --nodes 1
#SBATCH --ntasks 40
#SBATCH --time 3:00:00

ssh nia-gw -L 9999:licenseserver.institution.ca:9999 -N -f
export MLM_LICENSE_FILE=9999@localhost

module load thesoftware/2.0
mpirun thesoftware .....

Connecting to a program running on a compute node

SSH tunnelling can also be used in the context of Compute Canada to allow a user's computer to connect to a compute node on a cluster through an encrypted tunnel that is routed via the login node of this cluster. This technique allows graphical output of applications like a Jupyter Notebook or visualization software to be displayed transparently on the user's local workstation even while they are running on a cluster's compute node. When connecting to a database server where the connection is only possible through the head node, SSH tunnelling can be used to bind an external port to the database server.

There is Network Address Translation (NAT) on both Graham and Cedar allowing users to access the internet from the compute nodes. On Graham however, access is blocked by default at the firewall. Contact technical support if you need to have a specific port opened, supplying also the IP address or range of addresses which should be allowed to use that port.

From Linux or MacOS X

On a Linux or MacOS X system, we recommend using the sshuttle Python package.

On your computer, open a new terminal window and run the following sshuttle command to create the tunnel.

[name@my_computer $] sshuttle --dns -Nr userid@machine_name

Then, copy and paste the application's URL into your browser. If your application is a Jupyter notebook, for example, you are given a URL with a token:

 http://cdr544.int.cedar.computecanada.ca:8888/?token=7ed7059fad64446f837567e32af8d20efa72e72476eb72ca

From Windows

An SSH tunnel can be created from Windows using MobaXTerm as follows.

Open two sessions in MobaXTerm.

  • Session 1 should be a connection to a cluster. Start your job there following the instructions for your application, such as Jupyter Notebook. You should be given a URL that includes a host name and a port, such as cdr544.int.cedar.computecanada.ca:8888 for example.
  • Session 2 should be a local terminal in which we will set up the SSH tunnel. Run the following command, replacing this example host name with the one from the URL you received in Session 1.
[name@my_computer ]$  ssh -L 8888:cdr544.int.cedar.computecanada.ca:8888 someuser@cedar.computecanada.ca

This command forwards connections to local port 8888 to port 8888 on cdr544.int.cedar.computecanada.ca, the remote port. The local port number, the first one, does not need to match the remote port number, the second one, but it is conventional and reduces confusion.

Modify the URL you were given in Session 1 by replacing the host name with localhost. Again using an example from Jupyter Notebooks, this would be the URL to paste into a browser:

 http://localhost:8888/?token=7ed7059fad64446f837567e32af8d20efa72e72476eb72ca

Example for connecting to a database server on Cedar from your desktop

In the following "PORT" is an arbitrary port number which should be opened in the firewall of Cedar's head node. Before trying this, please contact Technical support and we will assign a port number to you. This is so that more than one user can use the database server at the same time.

Commands to connect to PostgreSQL and MySQL respectively are:

 
ssh -2 -L 127.0.0.1:PORT:cedar-pgsql-vm.int.cedar.computecanada.ca:5432 someuser@cedar.computecanada.ca
ssh -2 -L 127.0.0.1:PORT:cedar-mysql-vm.int.cedar.computecanada.ca:3306 someuser@cedar.computecanada.ca

These commands connect your localhost:PORT to cedar.computecanada.ca:PORT and bind it with cedar-pgsql-vm.int.cedar.computecanada.ca:5432. "someuser" in this example is your Compute Canada username. The difference between this connection and an ordinary SSH connection is that you can now use another terminal to connect to the database server directly from your desktop. On your desktop run one of these commands, for PostgreSQL or MySQL as appropriate:

 
psql -h 127.0.0.1 -P PORT -U <your username> -W
mysql -h 127.0.0.1 -P PORT -u <your username> -p

Both MySQL and PostgreSQL will require a password.

  • For PostgreSQL the password is your Compute Canada password.
  • For MySQL the password is stored in your ".my.cnf" located in your home directory on Cedar.

The database connection will remain open as long as the SSH connection remains open.