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Bioinformatics: Difference between revisions
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See [[Available_software#List_of_globally-installed_modules|Available software]] for a list of bioinformatics applications on our systems. | See [[Available_software#List_of_globally-installed_modules|Available software]] for a list of bioinformatics applications on our systems. | ||
You can sort on | You can sort on <i>Type</i>, where bioinformatics software is categorized as <i>bio</i>. | ||
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Some bioinformatics software is available as [[Python]] packages, which do not appear on the above list. | Some bioinformatics software is available as [[Python]] packages, which do not appear on the above list. | ||
See [[Available Python wheels]] for a list of Python | See [[Available Python wheels]] for a list of Python <i>wheels</i> customized for our clusters. | ||
=Data= <!--T:9--> | =Data= <!--T:9--> | ||
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{{Command|ls /cvmfs/ref.mugqic/genomes/species}} | {{Command|ls /cvmfs/ref.mugqic/genomes/species}} | ||
=Container | =Container repository= <!--T:16--> | ||
The Bioinformatics National Team maintains a repository of Apptainer (formerly Singularity) containers which provide common workflows and those workflows requiring preservation. Learn more at [[Biorepo Containers]]. | The Bioinformatics National Team maintains a repository of Apptainer (formerly Singularity) containers which provide common workflows and those workflows requiring preservation. Learn more at [[Biorepo Containers]]. | ||
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