Computational chemistry: Difference between revisions

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=== Notes on installed software ===
=== Notes on installed software ===
<span style="color:red">TO DO:</span> Reorganize this list thematically, e.g. separate applications from libraries. Add annotations about intended purposes.


==== Applications ====
<span style="color:red">TO DO:</span> Add comments distinguishing these applications from one another.
* [[Abinit]]
* [[Abinit]]
* [https://github.com/SebWouters/CheMPS2 CheMPS2]
* [http://www.cp2k.org/ CP2K]
* [http://www.cp2k.org/ CP2K]
* [http://cpmd.org CPMD]
* [http://cpmd.org CPMD]
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* [http://www.msg.chem.iastate.edu/gamess/index.html GAMESS-US]
* [http://www.msg.chem.iastate.edu/gamess/index.html GAMESS-US]
* [[Gaussian]], available only at [[Graham]]
* [[Gaussian]], available only at [[Graham]]
* [https://openkim.org/ OpenKIM]
* [http://www.tddft.org/programs/octopus/wiki/index.php/Libxc Libxc], a code library for development of density-functional models.
* [http://www.cmbi.ru.nl/molden/ Molden], a visualization tool for use in conjunction with GAMESS, Gaussian, & others.
* [http://www.nwchem-sw.org NWChem]
* [http://www.nwchem-sw.org NWChem]
* [http://open3dqsar.sourceforge.net/?Home Open3DQSAR]
* [http://openbabel.org OpenBabel], a tool for converting between file formats for chemical data.
* [[ORCA]]
* [[ORCA]]
* [https://pcmsolver.readthedocs.org PCMSolver], a tool for code development related to the Polarizable Continuum Model. Some packages offer built-in capabilities related to the PCM.
* [http://www.psicode.org/ PSI4]
* [http://www.psicode.org/ PSI4]
* [[Quantum ESPRESSO]]
* [[Quantum ESPRESSO]]
* [http://departments.icmab.es/leem/siesta SIESTA]
* [http://departments.icmab.es/leem/siesta SIESTA]
* [https://github.com/atztogo/spglib Spglib], a library for code development relating to symmetries of crystals.
* [[VASP]]
* [[VASP]]
==== Libraries and tools ====
* [https://github.com/SebWouters/CheMPS2 CheMPS2], a "library which contains a spin-adapted implementation of the density matrix renormalization group (DMRG) for ab initio quantum chemistry."
* [http://www.tddft.org/programs/octopus/wiki/index.php/Libxc Libxc], a code library of density-functional models.
* [http://www.cmbi.ru.nl/molden/ Molden], a visualization tool for use in conjunction with GAMESS, Gaussian, & others.
* [http://open3dqsar.sourceforge.net/?Home Open3DQSAR], a "tool aimed at pharmacophore exploration by high-throughput chemometric analysis of molecular interaction fields."
* [http://openbabel.org OpenBabel], a set of tools to enable one "to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas."
* [https://pcmsolver.readthedocs.org PCMSolver], a tool for code development related to the Polarizable Continuum Model. (Some applications listed above offer built-in capabilities related to the PCM.)
* [https://github.com/atztogo/spglib Spglib], a code library for development relating to symmetries of crystals.


For an automatically-generated list of versions installed on Compute Canada systems, see [[Available software]]. For an annotated list of software supported by the Biomolecular Simulation National Team, see [[Biomolecular simulation]].
For an automatically-generated list of versions installed on Compute Canada systems, see [[Available software]]. For an annotated list of software supported by the Biomolecular Simulation National Team, see [[Biomolecular simulation]].
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